Hi,
The version of GATK i have installed is unable to find command "HaplotypeCaller", i have the following versions of GATK installed.
version 2.0-0-gb142977 (built from git)
version 2.0-0-g4c0ffd4 (GenomeAnalysisTKLite.jar)
version 1.6-13-g91f02df
Errors out saying cannot find walker with name HaplotypeCaller.
Thanks
Uday