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Subsetting contigs from existing .g.vcf's

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Hi,

I've used HaplotypeCaller to call variants on whole genome CRAMs without specifying regions. Now, I'd like to subset this data to chromosomes 1-22 + X without redoing the calling. Is there a "proper" way to do this in GATK or I should dive into the structure of the vcf's and truncate the data?

Thanks!


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