HaplotypeCaller for a long time

Hi @Geraldine_VdAuwera

I have many bam files obtained through best practices. I want to get gvcf for each sample, but it puzzled me that most samples finished the HaplotypeCaller (version 3.5) process in three days (genome size,about 3G ,sequencing depth, about 10X), but only three samples have run last for a half month(liking following). I do not know why, maybe something unexpected happened to these samples. Any suggestion will be appreciated!

INFO 20:35:24,351 ProgressMeter - 17:67437745 1.771981436E9 3.1 w 17.8 m 65.5% 4.8 w 11.5 d
INFO 20:36:24,352 ProgressMeter - 17:67487105 1.771981436E9 3.1 w 17.8 m 65.5% 4.8 w 11.5 d
INFO 20:37:24,355 ProgressMeter - 17:67547076 1.771981436E9 3.1 w 17.8 m 65.5% 4.8 w 11.5 d