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Does the Haplotype Caller perform Linkage Disequilibirum as part of the variant callling algorithm?

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Hi,

I'd like to know if the Haplotype Caller perform Linkage Disequilibirum (LD) to decide wether to call a variant or not as part of the variant callling algorithm?

I've read documentation about the Haplotype Caller, but I cannot find anything about LD, so should I assume that it doesn't do LD?

Thank you,


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