Quantcast
Channel: haplotypecaller — GATK-Forum
Viewing all articles
Browse latest Browse all 1335

Queue and PBS scheduler

$
0
0

I would like to run HaplotypeCaller on some WGS samples from 24 individuals. I have attempted to use the multithreading option but would instead like to use the scatter-gather approach with Queue on our cluster as this will hopefully run much quicker. I see that there was a patch written for Queue to work with PBS scheduler some time back, however, I am struggling to find the associated documentation for it. Could you please point me in the right direction or provide some advice on how to do this.


Viewing all articles
Browse latest Browse all 1335

Trending Articles