What is the --min_base_quality_score mean ?
Is it base on the mapping quality in the sam/bam file or the sequencing base quality?
I'm a little bit confused by the description of the tool document in UnifiedGenotyper or HaplotypeCaller.
What is the --min_base_quality_score mean ?
Is it base on the mapping quality in the sam/bam file or the sequencing base quality?
I'm a little bit confused by the description of the tool document in UnifiedGenotyper or HaplotypeCaller.