Hi. When I reduce my BAM files with ReduceReads and then run HaplotypeCaller I get this warning:
Ignoring SAM validation error: ERROR: Read name 1060, No real operator (M|I|D|N) in CIGAR
Why is this? Is it OK to inore it?
Hi. When I reduce my BAM files with ReduceReads and then run HaplotypeCaller I get this warning:
Ignoring SAM validation error: ERROR: Read name 1060, No real operator (M|I|D|N) in CIGAR
Why is this? Is it OK to inore it?